• Web Portal

    In this module, you will learn:
    • how to manage your files on a cluster with web inerface
    • how to run interactive applications like RStudio and Jupyter Notebook

    Connect to Open OnDemand: here

    Learn more about Open OnDemand (fr): here

     Start here to launch a simple calculation fast !

    • Navigate the portal

          

    • Run Jupyter or RStudio

       

       

      To run RStudio with modules, you can load them directly while creating a session.

      For Jupyter Notebook, currently you have to first create a Python kernel via terminal. You can follow this procedure and load modules you need during the first step:

      1/ From your normal shell session:
       -- module load bioinfo-ifb python/3.9
       -- python3 -m ipykernel install --user --name="myenv" --display-name="PythonEnvTest"

      2/ From your web session during new notebook creation:
       -- open jupyter lab
       -- chose PythonEnvTest as a kernel

       

    • Quiz icon
      Test Web Portal
      After this module, you should be able to:
      • be able to connect to Open OnDemand portal
      • manage your files
      • run interactive applications